Guess what Pollyanna, people judge organizations based on their most outspoken members. That is how the world works. You don't get to cry about it. It is the same for everyone. Some rando Mormon bishop gets arrested, the headline tags him as a Mormon. You don't get an exception because of minority status. You want to be respected by everyone, you can't whine when you get treated like every other organization in existence.
Again, the problem you have is that you come from the angle that everything you dislike comes from a place of evil and only you can recognize fairness and virtue. You don't get to be the arbiter of justice and how everyone else feels. You don't get to sit in judgement of everyone else's motives and prejudices. You need to do you, and when you get that figured out, maybe you can start helping people instead if complaining about what everyone else is doing.
All that being said, I want everyone in this thread to understand that I don't harbor any real ill will to anyone on the other side of the issue and I do understand that they are frustrated about many things. In many cases I actually agree with their desires, I just disagree strongly on tactics and the way to get there.